/* Record reading layout: summary sections, search listing, tables, evidence.
 * Uses the tokens in styles.css; no cards, shadows or pills. */

/* ---------- Overview summary (non-protein records) ---------- */
.reading-control { display: flex; gap: 6px; align-items: center; font-size: 13px; color: var(--ink-soft); }
.reading-control select { padding: 4px 6px; }
body:not(.detailed-reading) .record-ribbon:not(.welcome-ribbon) .record-stat-strip { display: none; }
.record-summary { display: grid; grid-template-columns: minmax(0, 1fr) 280px; align-items: start; gap: 32px; }
.summary-main, .summary-aside, #overviewEvidence { display: grid; gap: 22px; min-width: 0; }
.summary-section { min-width: 0; padding: 0; border: 0; border-radius: 0; background: none; }
.summary-section h2 { margin: 0 0 10px; padding-bottom: 5px; border-bottom: 1px solid var(--line); font-size: 18px; font-weight: 600; line-height: 1.3; }
.summary-section header > h2 { margin-bottom: 0; }
.summary-section header { margin-bottom: 10px; }
.summary-section header > p { margin: 4px 0 0; color: var(--ink-soft); font-size: 12.5px; }
.summary-section p { overflow-wrap: anywhere; }
.summary-lead { margin: 6px 0; font-size: 16px; font-weight: 400; line-height: 1.55; }
.summary-caption { color: var(--ink-soft); font-size: 12.5px; line-height: 1.5; }
.summary-facts { margin: 0; }
.summary-facts > div { display: grid; grid-template-columns: 130px minmax(0, 1fr); gap: 12px; padding: 5px 0; border-bottom: 1px solid var(--line-soft); }
.summary-facts > div:last-child { border-bottom: 0; }
.summary-facts dt { color: var(--ink-soft); font-size: 13px; }
.summary-facts dd { margin: 0; font-size: 14px; overflow-wrap: anywhere; }
.summary-aside .summary-facts > div { display: block; padding: 5px 0; }
.summary-aside .summary-facts dt { margin-bottom: 1px; font-size: 12.5px; }
.summary-aside .summary-facts dd { font-size: 13.5px; }
.summary-aside .summary-section h2 { font-size: 15px; }
.summary-text-action { padding: 4px 0; color: var(--teal); border: 0; border-radius: 0; background: transparent; font-size: 13px; text-align: left; }
.summary-text-action:hover:not(:disabled) { background: transparent; text-decoration: underline; }
.summary-links { display: flex; flex-wrap: wrap; gap: 2px 14px; }
.summary-links a { padding: 0; border: 0; border-radius: 0; background: none; font-size: 13.5px; }
.summary-actions { display: grid; gap: 0; }
.summary-actions button { display: block; padding: 6px 0; color: var(--teal); text-align: left; border: 0; border-bottom: 1px solid var(--line-soft); border-radius: 0; background: none; font-size: 13.5px; }
.summary-actions button:hover:not(:disabled) { border-bottom-color: var(--line-soft); text-decoration: underline; }
.summary-actions span { display: block; margin-top: 1px; color: var(--ink-soft); font-size: 12.5px; }
.summary-release { margin: 0; font-size: 13.5px; }
.hypothesis-disclosure { margin-top: 14px; padding: 6px 0 0; border: 0; border-top: 1px solid var(--line-soft); border-radius: 0; background: none; }
.hypothesis-disclosure summary { cursor: pointer; font-size: 13.5px; font-weight: 600; }
.hypothesis-disclosure summary .evidence-badge { margin-left: 8px; }
.hypothesis-disclosure > p { color: var(--ink-soft); font-size: 12.5px; }
/* Evidence labels: plain secondary text, no tinted chips. */
.evidence-badge,
.evidence-badge.observed,
.evidence-badge.prediction,
.evidence-badge.model,
.evidence-badge.unknown,
.evidence-badge.database { display: inline; padding: 0; color: var(--ink-soft); border-radius: 0; background: none; font-size: 12px; font-weight: 400; line-height: inherit; white-space: nowrap; }
.evidence-badge.prediction { font-style: italic; }
.summary-annotation-list, .summary-paper-list { margin: 0; padding: 0; list-style: none; }
.summary-annotation-list li { padding: 5px 0; border-bottom: 1px solid var(--line-soft); font-size: 13.5px; }
.summary-annotation-list li .evidence-badge { margin-left: 6px; }
.summary-paper-list li { padding: 6px 0; border-bottom: 1px solid var(--line-soft); overflow-wrap: anywhere; }
.summary-paper-list li p { margin: 2px 0; color: var(--ink); font-size: 13px; }
.summary-paper-list small { color: var(--ink-soft); font-size: 12px; }

/* ---------- Annotation browser (legacy record list) ---------- */
.annotation-layout { grid-template-columns: 240px minmax(0, 1fr); align-items: start; }
.annotation-layout > .record-main-column { grid-column: 2; grid-row: 1; }
.annotation-layout > .record-side-column { grid-column: 1; grid-row: 1; position: sticky; top: 12px; }
.annotation-directory { display: grid; gap: 4px; }
.annotation-directory button { width: 100%; text-align: left; white-space: normal; }
.annotation-directory-section { display: flex; justify-content: space-between; gap: 8px; font-weight: 600; }
.annotation-directory-child { max-width: calc(100% - 10px); margin: 0 0 0 10px; padding: 4px 10px; color: var(--ink-soft); border: 0; border-left: 2px solid var(--line); border-radius: 0; background: transparent; font-size: 13.5px; }
.annotation-directory .active { color: var(--ink); border-color: var(--teal); background: var(--teal-soft); }
.annotation-subheading { margin: 20px 0 8px; padding: 0 0 5px; border-bottom: 1px solid var(--line); font-size: 16px; }
.annotation-subsection-control { display: flex; flex-wrap: wrap; align-items: center; gap: 10px; margin: 10px 0; font-weight: 600; }
.annotation-subsection-control select { min-width: 0; max-width: 100%; }
.annotation-technical { margin: 10px 0; font-size: 13.5px; }
.annotation-technical summary { padding: 4px 0; color: var(--teal); cursor: pointer; }

/* ---------- Cross-species comparison ---------- */
.comparison-workspace { min-width: 0; padding: 0; }
.comparison-workspace h2 { margin-top: 0; }
.comparison-workspace form { display: grid; gap: 10px; margin: 16px 0; }
.comparison-workspace form button { justify-self: start; }
.comparison-workspace textarea { box-sizing: border-box; width: 100%; padding: 8px; border: 1px solid var(--line-strong); border-radius: var(--radius); font-size: 14px; resize: vertical; }
.comparison-species { display: grid; grid-template-columns: repeat(auto-fit, minmax(235px, 1fr)); gap: 6px 16px; margin: 0; padding: 10px 0; border: 0; border-top: 1px solid var(--line); border-bottom: 1px solid var(--line); border-radius: 0; }
.comparison-species label { display: flex; align-items: start; gap: 8px; font-size: 13.5px; }
.comparison-species input { flex: none; }
.comparison-table-scroll { max-width: 100%; overflow-x: auto; }
.comparison-table { width: 100%; border-collapse: collapse; font-size: 13px; }
.comparison-table th, .comparison-table td { padding: 6px 10px; text-align: left; vertical-align: top; border-bottom: 1px solid var(--line-soft); }
.comparison-table th { font-weight: 600; white-space: nowrap; border-bottom-color: var(--line); background: var(--surface-soft); }
.comparison-table td:first-child { white-space: nowrap; }
.comparison-table details { min-width: 110px; max-width: 360px; }
.comparison-table details[open] { min-width: 230px; }
.comparison-table dd { margin: 2px 0 8px; overflow-wrap: anywhere; }
.comparison-table dt { color: var(--ink-soft); }
.comparison-status { display: inline; min-width: 0; padding: 0; border-radius: 0; background: none; }
.comparison-status.hit { font-weight: 600; }
.comparison-status.missing { color: var(--ink-soft); background: none; }
@media (max-width: 1000px) {
  .annotation-layout { grid-template-columns: 1fr; }
  .annotation-layout > .record-main-column { grid-column: 1; grid-row: 2; }
  .annotation-layout > .record-side-column { position: static; grid-column: 1; grid-row: 1; }
  .annotation-directory { grid-template-columns: repeat(2, minmax(0, 1fr)); }
}

/* ---------- Evidence topics ---------- */
.section-heading p, .microcopy, .notice { line-height: 1.5; }
.external-link-section:not([open]) { padding-bottom: 0; }
.evidence-overview-counts { display: flex; flex-wrap: wrap; gap: 4px 18px; margin-bottom: 12px; }
.evidence-overview-counts span { padding: 0; color: var(--ink-soft); border-radius: 0; background: none; font-size: 13px; }
.evidence-overview-counts b { margin-left: 4px; color: var(--ink); font-weight: 600; font-variant-numeric: tabular-nums; }
.evidence-topic { margin: 0; border: 0; border-bottom: 1px solid var(--line-soft); border-radius: 0; background: none; }
.evidence-topic > summary { display: flex; align-items: baseline; justify-content: space-between; gap: 12px; padding: 7px 0; cursor: pointer; list-style: none; }
.evidence-topic > summary::-webkit-details-marker { display: none; }
.evidence-topic > summary::before { flex-shrink: 0; width: 10px; color: var(--ink-soft); content: "+"; }
.evidence-topic[open] > summary::before { content: "\2212"; }
.evidence-topic > summary > span:first-of-type { flex: 1; min-width: 0; }
.evidence-topic strong { font-size: 13.5px; font-weight: 600; overflow-wrap: anywhere; }
.evidence-topic small { display: block; margin-top: 1px; color: var(--ink-soft); font-size: 12.5px; }
.evidence-topic-body { padding: 0 0 10px 22px; }
.evidence-pagination { display: flex; align-items: center; justify-content: space-between; gap: 10px; margin-top: 14px; font-size: 13px; }
.evidence-pagination button { font-size: 13px; }
.summary-empty { padding: 12px 0; color: var(--ink-soft); border-radius: 0; background: none; font-size: 13.5px; }
.record-technical { margin-top: 8px; padding: 0; border-radius: 0; background: none; overflow-wrap: anywhere; }
.record-technical summary { color: var(--teal); cursor: pointer; font-size: 12.5px; }
.network-presets { padding: 10px 0 12px; border-bottom: 1px solid var(--line); }
.network-presets label { display: block; margin-bottom: 5px; font-size: 13px; font-weight: 600; }
.network-presets select { width: 100%; padding: 5px 6px; font-size: 13px; }
.network-presets p { color: var(--ink-soft); font-size: 12.5px; line-height: 1.5; }

/* ---------- Search results ---------- */
.search-results-all { display: block; width: 100%; padding: 7px 12px; color: var(--teal); text-align: left; border: 0; border-radius: 0; background: var(--surface-soft); font-size: 13px; }
.search-results-all:hover:not(:disabled) { background: var(--surface-soft); text-decoration: underline; }
.search-listing h2 { margin: 0 0 4px; padding-bottom: 0; border-bottom: 0; font-size: 18px; }
.search-listing > p { margin: 0 0 10px; color: var(--ink-soft); font-size: 13px; }
.search-table-wrap { overflow-x: auto; }
.search-listing table { width: 100%; border-collapse: collapse; font-size: 13px; }
.search-listing th { padding: 6px 10px; color: var(--ink); text-align: left; white-space: nowrap; font-weight: 600; border-top: 1px solid var(--line); border-bottom: 1px solid var(--line); background: var(--surface-soft); }
.search-listing td { padding: 6px 10px; vertical-align: top; border-bottom: 1px solid var(--line-soft); }
.search-listing td:first-child { min-width: 195px; }
.search-listing td:first-child a { font-weight: 600; }
.search-listing td small { display: block; margin-top: 1px; color: var(--ink-soft); font-size: 12px; }
.search-listing td:first-child small { font-family: var(--mono); }
.search-listing td.search-ptype { min-width: 9em; max-width: 17em; }
.search-listing td.search-ptype .na { color: var(--ink-soft); }

/* ---------- Saved / recent panel (dropdown) ---------- */
.saved-records-panel { position: absolute; top: 110px; right: max(var(--page-gutter), calc((100% - var(--page-width)) / 2)); z-index: 60; width: min(760px, calc(100% - 24px)); max-height: 70vh; padding: 14px 18px; overflow-y: auto; border: 1px solid var(--line); border-radius: var(--radius); background: var(--surface); box-shadow: var(--shadow-menu); }
.saved-panel-heading { display: flex; align-items: baseline; gap: 12px; padding-bottom: 6px; border-bottom: 1px solid var(--line); }
.saved-panel-heading strong { font-size: 15px; }
.saved-panel-heading span { color: var(--ink-soft); font-size: 12.5px; }
.saved-panel-heading button { margin-left: auto; }
.saved-panel-grid { display: grid; grid-template-columns: 1fr 1fr; gap: 24px; }
.saved-panel-grid h2 { margin: 10px 0 4px; font-size: 14px; }
.saved-panel-grid ul { margin: 0 0 8px; padding: 0; list-style: none; }
.saved-panel-grid li { padding: 5px 0; border-bottom: 1px solid var(--line-soft); }
.saved-panel-grid a { display: block; font-size: 13.5px; overflow-wrap: anywhere; }
.saved-panel-grid small { display: block; color: var(--ink-soft); font-family: var(--mono); font-size: 12px; }
.saved-panel-grid button { margin-top: 4px; padding: 2px 8px; font-size: 12.5px; }

@media (min-width: 1600px) { .network-workspace { margin-right: -80px; margin-left: -80px; } }
@media (max-width: 1150px) {
  .saved-records-panel { top: 150px; }
  .record-summary { grid-template-columns: minmax(0, 1fr) 250px; gap: 20px; }
}
@media (max-width: 780px) {
  .record-summary, .record-layout { grid-template-columns: 1fr; }
  .summary-aside { grid-template-columns: 1fr; }
  .summary-facts > div { grid-template-columns: 100px minmax(0, 1fr); gap: 10px; }
  .saved-panel-grid { grid-template-columns: 1fr; gap: 0; }
  .evidence-topic > summary { flex-wrap: wrap; }
  .evidence-pagination { flex-wrap: wrap; }
  .saved-records-panel { top: 120px; right: 12px; }
}

/* ---------- Data tables (measurements, homology, downloads, home) ---------- */
.measure-scroll { overflow-x: auto; }
.measure-table { width: 100%; border-collapse: collapse; font-size: 13px; }
.measure-table th, .measure-table td { padding: 6px 10px; text-align: left; vertical-align: top; border-bottom: 1px solid var(--line-soft); }
.measure-table th { position: sticky; top: 0; color: var(--ink); font-weight: 600; border-top: 1px solid var(--line); border-bottom: 1px solid var(--line); background: var(--surface-soft); }
.measure-table td.num, .measure-table th.num { text-align: right; font-variant-numeric: tabular-nums; white-space: nowrap; }
.measure-table tr.measure-notable td { background: none; }
.measure-table tr.measure-notable td:first-child { box-shadow: inset 2px 0 0 var(--teal); }
.measure-table.compact { margin-bottom: 6px; font-size: 13px; }
.measure-dataset .section-body { max-height: 520px; overflow-y: auto; }
.filter-group.hidden { display: none; }

/* Homology transfer tab. */
.homology-table td:nth-child(1) { min-width: 220px; }
.bin-tag,
.bin-tag.bin-S1,
.bin-tag.bin-T1,
.bin-tag.bin-S2 { display: inline-block; padding: 0 4px; color: var(--ink); border: 1px solid var(--line); border-radius: 2px; background: var(--surface); font-size: 12px; font-weight: 600; }
.prec-high { color: var(--ink); font-weight: 600; }
.prec-mid { color: var(--ink); font-weight: 400; }
.prec-low { color: var(--ink-soft); font-weight: 400; }
.header-link { padding: 0 8px; color: var(--teal); font-size: 14px; text-decoration: none; }
.header-link:hover { text-decoration: underline; }
.cov-measured { color: var(--ink); font-weight: 600; }
.cov-unreported { color: var(--ink-soft); }
.cov-absent { color: var(--ink-soft); font-style: italic; }
.coverage-details { margin: 8px 0 12px; }
.model-change-notice { margin-bottom: 12px; border-left: 3px solid var(--orange); }
.pct-bar { display: inline-block; width: 120px; height: 6px; vertical-align: middle; border-radius: 0; background: var(--line-soft); }
.pct-bar > span { display: block; height: 100%; border-radius: 0; background: var(--teal); }
.stage-dataset summary small { margin-left: 6px; color: var(--ink-soft); font-weight: normal; }
.relation-chip { display: inline-block; margin: 1px 2px 1px 0; }
/* Neighbour table under the network view (app.js). */
.neighbor-table { max-width: 1440px; margin: 14px auto 0; padding: 0 24px; }
.neighbor-table tbody tr { cursor: pointer; }
.neighbor-table tbody tr:hover td { background: var(--surface-soft); }
.neighbor-table th[data-neighbor-sort] { cursor: pointer; }
.neighbor-table .measure-table td:nth-child(2), .neighbor-table .measure-table td:nth-child(3) { white-space: nowrap; }
.neighbor-table .section-heading .batch-export { width: auto; margin: 0; padding: 4px 12px; }
.downloads-table td:first-child { min-width: 280px; }
.downloads-table code { font-size: 12px; word-break: break-all; }